Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Trophoblast stem cells
strain
129/Sv
chip antibody
H3K4me1 (Abcam, ab8895, lot 962583)
cell type
Trophoblast stem cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
59062171
Reads aligned (%)
94.3
Duplicates removed (%)
22.3
Number of peaks
30037 (qval < 1E-05)

mm9

Number of total reads
59062171
Reads aligned (%)
94.1
Duplicates removed (%)
22.4
Number of peaks
29397 (qval < 1E-05)

Base call quality data from DBCLS SRA