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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: Trophoblast stem cells
ATCC
MeSH
RIKEN BRC
SRX204139
GSM1035385: mouse ts h3k4me1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA
Attributes by original data submitter
Sample
source_name
Trophoblast stem cells
strain
129/Sv
chip antibody
H3K4me1 (Abcam, ab8895, lot 962583)
cell type
Trophoblast stem cells
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
59062171
Reads aligned (%)
94.3
Duplicates removed (%)
22.3
Number of peaks
30037 (qval < 1E-05)
mm9
Number of total reads
59062171
Reads aligned (%)
94.1
Duplicates removed (%)
22.4
Number of peaks
29397 (qval < 1E-05)
Base call quality data from
DBCLS SRA