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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GRHL3
wikigenes
PDBj
CellType: NHEK
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX204107
GSM1034504: R48-L2-Grhl3-Sequences; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GRHL3
Cell type
Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes
Attributes by original data submitter
Sample
source_name
Human neonatal epidermis_Grhl3 ChIP
cell type
human differentited primary keratinocytes (NHEK)
chip antibody
Grhl3 (Andersen Lab)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
151936213
Reads aligned (%)
72.9
Duplicates removed (%)
13.9
Number of peaks
4559 (qval < 1E-05)
hg19
Number of total reads
151936213
Reads aligned (%)
72.4
Duplicates removed (%)
15.0
Number of peaks
5057 (qval < 1E-05)
Base call quality data from
DBCLS SRA