Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Glioma tumorspheres
NA
NA

Attributes by original data submitter

Sample

source_name
INPUT TS543
cell type
glioma tumorsphere
genotype
wild-type
passage
N/A
chip antibody
INPUT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using the Magna ChIP™ G - Chromatin Immunoprecipitation Kit (Millipore) according to manufacturer's instructions. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
33599378
Reads aligned (%)
58.3
Duplicates removed (%)
0.5
Number of peaks
641 (qval < 1E-05)

hg19

Number of total reads
33599378
Reads aligned (%)
57.0
Duplicates removed (%)
0.5
Number of peaks
584 (qval < 1E-05)

Base call quality data from DBCLS SRA