Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pancreas
Cell type
MIA Paca-2
Primary Tissue
Pancreas
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
epithelial cells derivef from pancreatic carcinoma
cell line
MIA PaCa-2 pancreatic cancer cell line
antibody
Anti-Histone H3 (tri-methyl K4)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation and final DNA purification was carried out using the SimpleChIP Plus Enzymatic Chromatin IP Kit (9005, Cell Signaling Technology) NEBNext® ChIP-Seq Library Prep Master Mix Set for Illumina® (E6240, New England BioLabs)

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
43059505
Reads aligned (%)
97.2
Duplicates removed (%)
12.4
Number of peaks
22868 (qval < 1E-05)

hg19

Number of total reads
43059505
Reads aligned (%)
96.7
Duplicates removed (%)
13.6
Number of peaks
22691 (qval < 1E-05)

Base call quality data from DBCLS SRA