ChIP-Atlas: SRX2037272

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Pancreas
Cell type: MIA Paca-2
Primary Tissue: Pancreas
Tissue Diagnosis: Carcinoma

Attributes by original data submitter

Sample

source_name: epithelial cells derivef from pancreatic carcinoma
cell line: MIA PaCa-2 pancreatic cancer cell line
antibody: none

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Chromatin immunoprecipitation and final DNA purification was carried out using the SimpleChIP Plus Enzymatic Chromatin IP Kit (9005, Cell Signaling Technology) NEBNext® ChIP-Seq Library Prep Master Mix Set for Illumina® (E6240, New England BioLabs)

Sequencing Platform

instrument_model: NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 30997418
Reads aligned (%): 96.5
Duplicates removed (%): 8.8
Number of peaks: 1179 (qval < 1E-05)

hg19

Number of total reads: 30997418
Reads aligned (%): 95.0
Duplicates removed (%): 12.3
Number of peaks: 936 (qval < 1E-05)

Base call quality data from DBCLS SRA