Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adult
Cell type
Whole worm
NA
NA

Attributes by original data submitter

Sample

source_name
WT_NT_Input
developmental stage
L3-L4 mix
treated with
none; no treatment (NT)
tissue
whole body
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Worms were collected when became L3-L4 mix and handled with standard ChIP protocol. Purified DNA was used for DNA library construction using NEBNext Ultra DNA Library Prep Kit for Illumina.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

ce11

Number of total reads
7936022
Reads aligned (%)
98.0
Duplicates removed (%)
0.9
Number of peaks
365 (qval < 1E-05)

ce10

Number of total reads
7936022
Reads aligned (%)
98.0
Duplicates removed (%)
0.9
Number of peaks
376 (qval < 1E-05)

Base call quality data from DBCLS SRA