Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Blood
Cell type
Plasma Cells
MeSH Description
Specialized forms of antibody-producing B-LYMPHOCYTES. They synthesize and secrete immunoglobulin. They are found only in lymphoid organs and at sites of immune responses and normally do not circulate in the blood or lymph. (Rosen et al., Dictionary of Immunology, 1989, p169 & Abbas et al., Cellular and Molecular Immunology, 2d ed, p20)

Attributes by original data submitter

Sample

source_name
Chromatin IP against Med1 in MM.1S (500 nM JQ1)
diagnosis
Multiple myeloma
chip antibody
Med1/TRAP220
antibody catalog number
Bethyl A300-793A
cell type
Plasma cell
treatment duration
24 hr
treatment drug
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
46228532
Reads aligned (%)
52.5
Duplicates removed (%)
37.1
Number of peaks
1333 (qval < 1E-05)

hg38

Number of total reads
46228532
Reads aligned (%)
54.2
Duplicates removed (%)
35.8
Number of peaks
1342 (qval < 1E-05)

Base call quality data from DBCLS SRA