ChIP-Atlas: SRX203384

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Pluripotent stem cell
Cell type: ES cells
NA: NA

Attributes by original data submitter

Sample

source_name: Embryonic stem cells
strain: C57Bl/6 H3.3B-KO
antibody: no antibody

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 96868771
Reads aligned (%): 72.4
Duplicates removed (%): 13.5
Number of peaks: 999 (qval < 1E-05)

mm9

Number of total reads: 96868771
Reads aligned (%): 72.3
Duplicates removed (%): 13.5
Number of peaks: 914 (qval < 1E-05)

Base call quality data from DBCLS SRA