SRX203354
GSM1033575: H3K4me3 2x10e4 R3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

source_name
Primary (live-frozen) CD4+ cells
cell number
20000
chip antibody
H3K4me3 (Diagenode, Cat# pAb-003-050)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46802284
Reads aligned (%)
80.8
Duplicates removed (%)
98.6
Number of peaks
31 (qval < 1E-05)

hg19

Number of total reads
46802284
Reads aligned (%)
80.2
Duplicates removed (%)
99.1
Number of peaks
38 (qval < 1E-05)

Base call quality data from DBCLS SRA