SRX203341
GSM1033562: New input 1x10e5; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

source_name
Cultured CD4+ cells
cell number
100000
chip antibody
Input Mnase digested DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25390419
Reads aligned (%)
98.9
Duplicates removed (%)
18.9
Number of peaks
309 (qval < 1E-05)

hg19

Number of total reads
25390419
Reads aligned (%)
97.9
Duplicates removed (%)
19.4
Number of peaks
372 (qval < 1E-05)

Base call quality data from DBCLS SRA