Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

source_name
Cultured CD4+ cells
cell number
500000
chip antibody
Input Mnase digested DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
25875294
Reads aligned (%)
99.1
Duplicates removed (%)
12.8
Number of peaks
271 (qval < 1E-05)

hg19

Number of total reads
25875294
Reads aligned (%)
98.2
Duplicates removed (%)
13.4
Number of peaks
365 (qval < 1E-05)

Base call quality data from DBCLS SRA