SRX203331
GSM1033552: Benchmark H3K4me3 2x10e7; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

source_name
Cultured CD4+ cells
cell number
20000000
chip antibody
H3K4me3 (Diagenode, Cat# pAb-003-050)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13402262
Reads aligned (%)
97.3
Duplicates removed (%)
47.8
Number of peaks
20621 (qval < 1E-05)

hg19

Number of total reads
13402262
Reads aligned (%)
97.0
Duplicates removed (%)
48.1
Number of peaks
20579 (qval < 1E-05)

Base call quality data from DBCLS SRA