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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Nfe2
wikigenes
PDBj
CellType: Megakaryocytes
ATCC
MeSH
RIKEN BRC
SRX203207
GSM1032637: MK2D NFE2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Nfe2
Cell type
Cell type Class
Blood
Cell type
Megakaryocytes
MeSH Description
Very large BONE MARROW CELLS which release mature BLOOD PLATELETS.
Attributes by original data submitter
Sample
source_name
Immature Megakaryocytes
strain
CD1
age
E15
tissue
liver
cell type
Immature Megakaryocytes
genome/variation
wild-type
antibody
NF-E2 TB16+TB17, home made
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
34045779
Reads aligned (%)
95.1
Duplicates removed (%)
13.1
Number of peaks
823 (qval < 1E-05)
mm9
Number of total reads
34045779
Reads aligned (%)
94.8
Duplicates removed (%)
13.1
Number of peaks
890 (qval < 1E-05)
Base call quality data from
DBCLS SRA