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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: Gamma delta T cells
ATCC
MeSH
RIKEN BRC
SRX203128
GSM1032372: H3K27me3 gdCD27p ChIPSeq; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Blood
Cell type
Gamma delta T cells
NA
NA
Attributes by original data submitter
Sample
source_name
CD27+ gd T cells
cell type
primary cells (Lymph node and spleen)
protocol
ex vivo
strain
C57BL/6
antibody
H3K27me3 (Millipore, 07-449)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
35193657
Reads aligned (%)
96.5
Duplicates removed (%)
20.3
Number of peaks
586 (qval < 1E-05)
mm9
Number of total reads
35193657
Reads aligned (%)
96.3
Duplicates removed (%)
20.4
Number of peaks
618 (qval < 1E-05)
Base call quality data from
DBCLS SRA