SRX203126
GSM1032370: H3K4me2 gdCD27p ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
Gamma delta T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD27+ gd T cells
cell type
primary cells (Lymph node and spleen)
protocol
ex vivo
strain
C57BL/6
antibody
H3K4me2 (Millipore, 07-030)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29400289
Reads aligned (%)
79.8
Duplicates removed (%)
47.2
Number of peaks
24653 (qval < 1E-05)

mm9

Number of total reads
29400289
Reads aligned (%)
79.5
Duplicates removed (%)
47.4
Number of peaks
24679 (qval < 1E-05)

Base call quality data from DBCLS SRA