SRX202277
GSM1028284: MLL3WT INPUT; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF MLL3(+/+)
cell type
Mouse Embryonic Fibroblasts (MEF)
strain
C57BL/6
genotype/variation
MLL3 WT
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16338164
Reads aligned (%)
84.3
Duplicates removed (%)
20.3
Number of peaks
393 (qval < 1E-05)

mm9

Number of total reads
16338164
Reads aligned (%)
83.9
Duplicates removed (%)
20.4
Number of peaks
457 (qval < 1E-05)

Base call quality data from DBCLS SRA