SRX202271
GSM1028278: MLL1WT INPUT; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF MLL1(+/+)
cell type
Mouse Embryonic Fibroblasts (MEF)
strain
C57BL/6
genotype/variation
MLL1 WT
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29847540
Reads aligned (%)
81.8
Duplicates removed (%)
21.7
Number of peaks
576 (qval < 1E-05)

mm9

Number of total reads
29847540
Reads aligned (%)
81.5
Duplicates removed (%)
21.7
Number of peaks
666 (qval < 1E-05)

Base call quality data from DBCLS SRA