Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rrp40

Cell type

Cell type Class
Cell line
Cell type
S3
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S3 cells
chip antibody
Rrp40
cell type
S3 late embryonic cells
qualscores
phred33

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
162430123
Reads aligned (%)
9.7
Duplicates removed (%)
80.4
Number of peaks
16347 (qval < 1E-05)

dm6

Number of total reads
162430123
Reads aligned (%)
8.2
Duplicates removed (%)
83.3
Number of peaks
11655 (qval < 1E-05)

Base call quality data from DBCLS SRA