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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Rrp40
wikigenes
PDBj
CellType: S3
ATCC
MeSH
RIKEN BRC
SRX202125
GSM1028099: tech rep1 Rrp40 S3; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Rrp40
Cell type
Cell type Class
Cell line
Cell type
S3
Source
Oregon R
Developmental Stage
late embryonic stage
Attributes by original data submitter
Sample
source_name
S3 cells
chip antibody
Rrp40
cell type
S3 late embryonic cells
qualscores
phred64
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
14480165
Reads aligned (%)
45.4
Duplicates removed (%)
31.9
Number of peaks
5609 (qval < 1E-05)
dm3
Number of total reads
14480165
Reads aligned (%)
45.7
Duplicates removed (%)
30.6
Number of peaks
5052 (qval < 1E-05)
Base call quality data from
DBCLS SRA