Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rrp40

Cell type

Cell type Class
Cell line
Cell type
S3
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S3 cells
chip antibody
Rrp40
cell type
S3 late embryonic cells
qualscores
phred64

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

dm3

Number of total reads
14480165
Reads aligned (%)
31.7
Duplicates removed (%)
30.6
Number of peaks
5052 (qval < 1E-05)

dm6

Number of total reads
14480165
Reads aligned (%)
30.9
Duplicates removed (%)
31.9
Number of peaks
5609 (qval < 1E-05)

Base call quality data from DBCLS SRA