Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
A139 tumor cells
tumor
Tumor A139
treatment
N/A
chip-seq antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed as previously described (Reddy et al. Molecular Cell 2013). RNA-seq was performed as previously outlned (Gertz et al. 2012) Illumina Single End for ChIP-seq, Illumina Paired End for RNA-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
21894669
Reads aligned (%)
96.1
Duplicates removed (%)
2.5
Number of peaks
742 (qval < 1E-05)

hg19

Number of total reads
21894669
Reads aligned (%)
95.4
Duplicates removed (%)
3.7
Number of peaks
800 (qval < 1E-05)

Base call quality data from DBCLS SRA