Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
HCC70
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
HCC70 cells
cell line
HCC70
treatment
ethanol
chip-seq antibody
none (input)
cell type
HCC70 (Human Tnm Stage Iiia, Grade 3, Primary Ductal Carcinoma)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed as previously described (Reddy et al. Molecular Cell 2013). RNA-seq was performed as previously outlned (Gertz et al. 2012) Illumina Single End for ChIP-seq, Illumina Paired End for RNA-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
34971211
Reads aligned (%)
98.8
Duplicates removed (%)
3.1
Number of peaks
449 (qval < 1E-05)

hg19

Number of total reads
34971211
Reads aligned (%)
98.4
Duplicates removed (%)
3.8
Number of peaks
597 (qval < 1E-05)

Base call quality data from DBCLS SRA