Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA-MB-231 cells
cell line
MDA-MB-231
treatment
ethanol
chip-seq antibody
none (input)
cell type
MDA-MB-231 (Human Adenocarcinoma)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed as previously described (Reddy et al. Molecular Cell 2013). RNA-seq was performed as previously outlned (Gertz et al. 2012) Illumina Single End for ChIP-seq, Illumina Paired End for RNA-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
25183801
Reads aligned (%)
97.9
Duplicates removed (%)
3.3
Number of peaks
791 (qval < 1E-05)

hg19

Number of total reads
25183801
Reads aligned (%)
97.1
Duplicates removed (%)
4.2
Number of peaks
825 (qval < 1E-05)

Base call quality data from DBCLS SRA