SRX202005
GSM1027502: MC3T3BONED15 H3K4me1Veh; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Bone
Cell type
MC3T3-E1
NA
NA

Attributes by original data submitter

Sample

source_name
MC3T3-E1 cells differentiated for 15 days
passage number
5 - 12
antibody
H3K4me1 (Abcam, ab8895, lot# GR43807-1)
cell line
MC3T3-E1 differentiated for 15 days
treatment
ethanol vehicle

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
89834340
Reads aligned (%)
98.3
Duplicates removed (%)
10.5
Number of peaks
86223 (qval < 1E-05)

mm9

Number of total reads
89834340
Reads aligned (%)
98.2
Duplicates removed (%)
10.5
Number of peaks
86138 (qval < 1E-05)

Base call quality data from DBCLS SRA