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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Cebpb
wikigenes
PDBj
CellType: MC3T3-E1
ATCC
MeSH
RIKEN BRC
SRX201997
GSM1027494: MC3T3BONED15 CEBPbVeh; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Cebpb
Cell type
Cell type Class
Bone
Cell type
MC3T3-E1
NA
NA
Attributes by original data submitter
Sample
source_name
MC3T3-E1 cells differentiated for 15 days
passage number
5 - 12
antibody
C/EBPβ (Santa Cruz, C-19, sc-150, lot# F3011)
cell line
MC3T3-E1 differentiated for 15 days
treatment
ethanol vehicle
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
193886452
Reads aligned (%)
94.3
Duplicates removed (%)
68.7
Number of peaks
70490 (qval < 1E-05)
mm9
Number of total reads
193886452
Reads aligned (%)
93.9
Duplicates removed (%)
68.7
Number of peaks
70597 (qval < 1E-05)
Base call quality data from
DBCLS SRA