Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: MC3T3-E1
ATCC
MeSH
RIKEN BRC
SRX201987
GSM1027484: MC3T3 H3K4me1Veh; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Bone
Cell type
MC3T3-E1
NA
NA
Attributes by original data submitter
Sample
source_name
MC3T3-E1 cells
passage number
5 - 12
antibody
H3K4me1 (Abcam, ab8895, lot# GR43807-1)
cell line
MC3T3-E1
treatment
ethanol vehicle
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
158828237
Reads aligned (%)
97.7
Duplicates removed (%)
42.7
Number of peaks
91381 (qval < 1E-05)
mm9
Number of total reads
158828237
Reads aligned (%)
97.6
Duplicates removed (%)
42.7
Number of peaks
91668 (qval < 1E-05)
Base call quality data from
DBCLS SRA