Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
tj-GAL4>RNAi armi
genotype/variation
tj-Gal4>RNAi armi
Stage
from 5-6 days old flies
tissue/cell type
ovaries
molecule subtype
Rpb3-bound DNA
chip antibody
antiRpb3
chip antibody information
gift of Karen Adelman; Adelman et al. Mol Cell 2005

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
27059544
Reads aligned (%)
90.1
Duplicates removed (%)
47.1
Number of peaks
9431 (qval < 1E-05)

dm3

Number of total reads
27059544
Reads aligned (%)
90.3
Duplicates removed (%)
46.5
Number of peaks
9598 (qval < 1E-05)

Base call quality data from DBCLS SRA