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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: Ovary
ATCC
MeSH
RIKEN BRC
SRX201902
GSM1027430: tj-GAL4>RNAi armi rep2; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Adult
Cell type
Ovary
NA
NA
Attributes by original data submitter
Sample
source_name
tj-GAL4>RNAi armi
genotype/variation
tj-Gal4>RNAi armi
Stage
from 5-6 days old flies
tissue/cell type
ovaries
molecule subtype
Rpb3-bound DNA
chip antibody
antiRpb3
chip antibody information
gift of Karen Adelman; Adelman et al. Mol Cell 2005
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
27059544
Reads aligned (%)
90.1
Duplicates removed (%)
47.1
Number of peaks
9431 (qval < 1E-05)
dm3
Number of total reads
27059544
Reads aligned (%)
90.3
Duplicates removed (%)
46.5
Number of peaks
9598 (qval < 1E-05)
Base call quality data from
DBCLS SRA