Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
Neutrophil progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
neutrophil progenitor cells
cell type
human cord blood CD34+ cells-derived neutrophil progenitor cells
exposure conditions
no exposure
time of differentiation and exposure
5 days
differentiation
100 ng/ml G-CSF
chip antibody
H3K4me2 (Millipore, 07-030, lot:2225237 and 2309072)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Whole cell lysates of crosslinked cells were sonicated, clarified and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols for HiSeq platform

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
44103508
Reads aligned (%)
95.6
Duplicates removed (%)
23.7
Number of peaks
50544 (qval < 1E-05)

hg19

Number of total reads
44103508
Reads aligned (%)
95.2
Duplicates removed (%)
24.2
Number of peaks
50323 (qval < 1E-05)

Base call quality data from DBCLS SRA