Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Gonad

Cell type

Ovary

MeSH Description

The reproductive organ (GONADS) in female animals. In vertebrates, the ovary contains two functional parts: the OVARIAN FOLLICLE for the production of female germ cells (OOGENESIS); and the endocrine cells (GRANULOSA CELLS; THECA CELLS; and LUTEAL CELLS) for the production of ESTROGENS and PROGESTERONE.

Sample

MOLECULE

genomic DNA

DISEASE

iron deficiency, bipolar

BIOMATERIAL_PROVIDER

Shin Lin, Stanford University

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Ovary

TISSUE_DEPOT

N/A

COLLECTION_METHOD

Autopsy

DONOR_ID

STL002

DONOR_AGE

30

DONOR_HEALTH_STATUS

iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)

DONOR_SEX

Female

DONOR_ETHNICITY

Caucasian

sample_term_id

UBERON_0000992

Sequenced DNA Library

library_name

DNase.DS20827

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

68650819

Reads aligned (%)

82.4

Duplicates removed (%)

10.7

Number of peaks

55228 (qval < 1E-05)

hg19

Number of total reads

68650819

Reads aligned (%)

81.8

Duplicates removed (%)

11.7

Number of peaks

54998 (qval < 1E-05)