Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Placenta

Cell type

Placenta

MeSH Description

A highly vascularized mammalian fetal-maternal organ and major site of transport of oxygen, nutrients, and fetal waste products. It includes a fetal portion (CHORIONIC VILLI) derived from TROPHOBLASTS and a maternal portion (DECIDUA) derived from the uterine ENDOMETRIUM. The placenta produces an array of steroid, protein and peptide hormones (PLACENTAL HORMONES).

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

University of Washington, Congenital Defects Lab. Ian Glass

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Fetal Placenta

TISSUE_DEPOT

UW

COLLECTION_METHOD

fetal

DONOR_ID

H-24510

DONOR_AGE

day 105

DONOR_HEALTH_STATUS

NA

DONOR_SEX

Female

DONOR_ETHNICITY

NA

sample_term_id

UBERON_0001987

Sequenced DNA Library

library_name

DNase.DS20793

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

66100260

Reads aligned (%)

80.9

Duplicates removed (%)

20.7

Number of peaks

138690 (qval < 1E-05)

hg19

Number of total reads

66100260

Reads aligned (%)

80.5

Duplicates removed (%)

21.5

Number of peaks

138380 (qval < 1E-05)