Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Testes
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H23914_H24089_H24218_H24244
DONOR_AGE
pool
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Male
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0000473

Sequenced DNA Library

library_name
DNase.DS20170
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
66893800
Reads aligned (%)
77.4
Duplicates removed (%)
12.9
Number of peaks
71292 (qval < 1E-05)

hg19

Number of total reads
66893800
Reads aligned (%)
76.8
Duplicates removed (%)
14.6
Number of peaks
73481 (qval < 1E-05)

Base call quality data from DBCLS SRA