Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Kidney Pelvis
MeSH Description
The flattened, funnel-shaped expansion connecting the URETER to the KIDNEY CALICES.

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Renal Pelvis
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-24342
DONOR_AGE
day 96
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Female
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0001224

Sequenced DNA Library

library_name
DNase.DS20022
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
68402065
Reads aligned (%)
67.8
Duplicates removed (%)
12.9
Number of peaks
83493 (qval < 1E-05)

hg19

Number of total reads
68402065
Reads aligned (%)
67.4
Duplicates removed (%)
13.7
Number of peaks
83372 (qval < 1E-05)

Base call quality data from DBCLS SRA