Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Gonad

Cell type

Ovary

MeSH Description

The reproductive organ (GONADS) in female animals. In vertebrates, the ovary contains two functional parts: the OVARIAN FOLLICLE for the production of female germ cells (OOGENESIS); and the endocrine cells (GRANULOSA CELLS; THECA CELLS; and LUTEAL CELLS) for the production of ESTROGENS and PROGESTERONE.

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

University of Washington, Congenital Defects Lab. Ian Glass

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Fetal Ovary

TISSUE_DEPOT

UW

COLLECTION_METHOD

fetal

DONOR_ID

H23758_H23604

DONOR_AGE

pool

DONOR_HEALTH_STATUS

NA

DONOR_SEX

Female

DONOR_ETHNICITY

NA

sample_term_id

UBERON_0000992

Sequenced DNA Library

library_name

DNase.DS17445

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg38

Number of total reads

39991922

Reads aligned (%)

92.4

Duplicates removed (%)

7.8

Number of peaks

36545 (qval < 1E-05)

hg19

Number of total reads

39991922

Reads aligned (%)

91.7

Duplicates removed (%)

9.2

Number of peaks

37285 (qval < 1E-05)