SRX201788
Histone H3K4me3 ChIP-Seq of CD56 Primary Cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD56+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD56 Primary Cells
MARKERS
CD56+
DONOR_ID
RO 01701
DONOR_AGE
year 37
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Hispanic
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000623

Sequenced DNA Library

library_name
Histone.DS21715
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29987557
Reads aligned (%)
93.0
Duplicates removed (%)
9.2
Number of peaks
25517 (qval < 1E-05)

hg19

Number of total reads
29987557
Reads aligned (%)
92.4
Duplicates removed (%)
10.1
Number of peaks
25572 (qval < 1E-05)

Base call quality data from DBCLS SRA