SRX201317
GSM1024802: IgG negative control [reps 1 and 2]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 Breast Cancer Cells
cell line
MCF-7
chip antibody
IgG from rabbit serum (Sigma Aldrich, I5006)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42863623
Reads aligned (%)
46.9
Duplicates removed (%)
31.0
Number of peaks
4857 (qval < 1E-05)

hg19

Number of total reads
42863623
Reads aligned (%)
46.5
Duplicates removed (%)
32.3
Number of peaks
4734 (qval < 1E-05)

Base call quality data from DBCLS SRA