Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARNT

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 Breast Cancer Cells
cell line
MCF-7
chip antibody
ARNT antibody (Santa Cruz, H-172, catalog# sc-5580, lot# G3010)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
43171197
Reads aligned (%)
30.2
Duplicates removed (%)
43.7
Number of peaks
19591 (qval < 1E-05)

hg38

Number of total reads
43171197
Reads aligned (%)
31.1
Duplicates removed (%)
42.5
Number of peaks
19884 (qval < 1E-05)

Base call quality data from DBCLS SRA