Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AHR

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 Breast Cancer Cells
cell line
MCF-7
chip antibody
AHR antibody (Santa Cruz, H-211, catalog# sc-5579, lot# K1010)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
43156260
Reads aligned (%)
36.9
Duplicates removed (%)
30.8
Number of peaks
17453 (qval < 1E-05)

hg38

Number of total reads
43156260
Reads aligned (%)
37.8
Duplicates removed (%)
29.7
Number of peaks
17588 (qval < 1E-05)

Base call quality data from DBCLS SRA