Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

Monocytes-CD14+

Tissue

monocytes

Lineage

mesoderm

Description

Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), newly promoted to tier 2: not in 2011 analysis

Sample

source_name

Monocytes-CD14+_RO01746

biomaterial_provider

S. Heimfeld Laboratory, FHCRC

donor_id

ENCDO265AAA

biomaterial_type

primary cell

cell_type

CD14-positive monocyte

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

Monocytes-CD14+_RO01746

cell organism

human

cell description

Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS18065

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

2

Sequenced DNA Library

library_name

GSM1024791: UW_DnaseSeq_Monocytes-CD14+_RO01746Rep2

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

94714155

Reads aligned (%)

96.2

Duplicates removed (%)

29.0

Number of peaks

86560 (qval < 1E-05)

hg19

Number of total reads

94714155

Reads aligned (%)

95.7

Duplicates removed (%)

30.2

Number of peaks

88157 (qval < 1E-05)