Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Th17 Cells
MeSH Description
A subset of helper-effector T-lymphocytes which synthesize and secrete INTERLEUKINS IL-17; IL-17F; and IL-22. These cytokines are involved in host defenses and tissue inflammation in autoimmune diseases.

Attributes by original data submitter

Sample

source_name
Th17
biomaterial_provider
Dr. John Stamatoyannopoulos at UW
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
Th17
cell organism
human
cell description
T helper cells expressing IL-17, primary pheresis of single normal subject
cell karyotype
normal
cell lineage
mesoderm
cell sex
B
treatment
None
treatment description
No special treatment or protocol applies
labexpid
DS11039
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
1

Sequenced DNA Library

library_name
GSM1024790: UW_DnaseSeq_Th17Rep1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
28536109
Reads aligned (%)
76.8
Duplicates removed (%)
13.8
Number of peaks
29683 (qval < 1E-05)

hg19

Number of total reads
28536109
Reads aligned (%)
76.1
Duplicates removed (%)
15.5
Number of peaks
29648 (qval < 1E-05)

Base call quality data from DBCLS SRA