Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

bone marrow HS27a

Tissue

bone marrow

Description

HS27a Human Marrow Stromal Cells are fibroblastoid cells immortalized with HPV16 E6/E7 genes as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005, insert DNA is LXSN-16 E6E7 packaged in PA31.

Sample

source_name

bone_marrow_HS27a

biomaterial_provider

Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

bone_marrow_HS27a

cell organism

human

cell description

HS27a Human Marrow Stromal Cells are fibroblastoid cells immortalized with HPV16 E6/E7 genes as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005, insert DNA is LXSN-16 E6E7 packaged in PA31.

cell karyotype

normal

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS16602

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

1

Sequenced DNA Library

library_name

GSM1024785: UW_DnaseSeq_bone_marrow_HS27aRep1

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

43966338

Reads aligned (%)

98.6

Duplicates removed (%)

14.9

Number of peaks

67108 (qval < 1E-05)

hg19

Number of total reads

43966338

Reads aligned (%)

97.6

Duplicates removed (%)

17.5

Number of peaks

68986 (qval < 1E-05)