Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD20+ B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD20+_RO01778
biomaterial_provider
Rajinder Kaul, UW
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
CD20+_RO01778
cell organism
human
cell description
B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
labexpid
DS18208
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
338977054
Reads aligned (%)
46.4
Duplicates removed (%)
49.2
Number of peaks
85085 (qval < 1E-05)

hg38

Number of total reads
338977054
Reads aligned (%)
47.7
Duplicates removed (%)
48.1
Number of peaks
85846 (qval < 1E-05)

Base call quality data from DBCLS SRA