Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Th1 Cells
MeSH Description
A subset of helper-inducer T-lymphocytes which synthesize and secrete INTERLEUKIN-2; INTERFERON-GAMMA; and INTERLEUKIN-12. Due to their ability to kill antigen-presenting cells and their lymphokine-mediated effector activity, Th1 cells are associated with vigorous delayed-type hypersensitivity reactions.

Attributes by original data submitter

Sample

source_name
Th1_Wb54553204
biomaterial_provider
Dr. John Stamatoyannopoulos at UW
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
Th1_Wb54553204
cell organism
human
cell description
Th1 cells in vivo isolation, donor is Caucasian, male 33 year old, primary pheresis of single normal subject
cell karyotype
normal
cell lineage
mesoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
labexpid
DS17593
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
1

Sequenced DNA Library

library_name
GSM1024753: UW_DnaseSeq_Th1_Wb54553204Rep1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
66930068
Reads aligned (%)
96.5
Duplicates removed (%)
9.5
Number of peaks
43392 (qval < 1E-05)

hg19

Number of total reads
66930068
Reads aligned (%)
95.4
Duplicates removed (%)
12.0
Number of peaks
43433 (qval < 1E-05)

Base call quality data from DBCLS SRA