Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Others

Cell type

Mesenchymal stem cells

NA

NA

Sample

source_name

bone_marrow_MSC

biomaterial_provider

Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

bone_marrow_MSC

cell organism

human

cell description

These cells are primary fibroblastoid cells obtained from human bone marrow of normal donors as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005.

cell karyotype

normal

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS20518

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

2

Sequenced DNA Library

library_name

GSM1024748: UW_DnaseSeq_bone_marrow_MSCRep2

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

40772287

Reads aligned (%)

78.8

Duplicates removed (%)

29.1

Number of peaks

112286 (qval < 1E-05)

hg19

Number of total reads

40772287

Reads aligned (%)

78.3

Duplicates removed (%)

30.4

Number of peaks

112167 (qval < 1E-05)