Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: Treg
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX201254
GSM1024744: UW DnaseSeq Treg Wb78495824Rep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Blood
Cell type
Treg
NA
NA
Attributes by original data submitter
Sample
source_name
Treg_Wb78495824
biomaterial_provider
Dr. John Stamatoyannopoulos at UW
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
Treg_Wb78495824
cell organism
human
cell description
T regulatory cells in vivo isolation
cell karyotype
normal donor is Causasian, female 35 year old, primary pheresis of single normal subject
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
labexpid
DS14702
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
1
Sequenced DNA Library
library_name
GSM1024744: UW_DnaseSeq_Treg_Wb78495824Rep1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
51347170
Reads aligned (%)
93.5
Duplicates removed (%)
28.2
Number of peaks
65317 (qval < 1E-05)
hg19
Number of total reads
51347170
Reads aligned (%)
92.8
Duplicates removed (%)
30.0
Number of peaks
65204 (qval < 1E-05)
Base call quality data from
DBCLS SRA