Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

Treg Wb83319432

Tissue

blood

Lineage

mesoderm

Description

T regulatory cells in vivo isolation, donor is Caucasian, male 28 year old, primary pheresis of single normal subject

Sample

source_name

Treg_Wb83319432

biomaterial_provider

Dr. John Stamatoyannopoulos at UW

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

Treg_Wb83319432

cell organism

human

cell description

T regulatory cells in vivo isolation, donor is Caucasian, male 28 year old, primary pheresis of single normal subject

cell karyotype

normal

cell lineage

mesoderm

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS17589

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

1

Sequenced DNA Library

library_name

GSM1024741: UW_DnaseSeq_Treg_Wb83319432Rep1

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

102341222

Reads aligned (%)

98.1

Duplicates removed (%)

10.6

Number of peaks

47759 (qval < 1E-05)

hg19

Number of total reads

102341222

Reads aligned (%)

97.2

Duplicates removed (%)

12.5

Number of peaks

46829 (qval < 1E-05)