Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

Th2 Cells

MeSH Description

A subset of helper-inducer T-lymphocytes which synthesize and secrete the INTERLEUKINS IL-4; IL-5; IL-6; and IL-10. These cytokines influence B-cell development and antibody production as well as augmenting humoral responses.

Sample

source_name

Th2_Wb33676984

biomaterial_provider

Dr. John Stamatoyannopoulos at UW

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

Th2_Wb33676984

cell organism

human

cell description

Th2 cells in vivo isolation, donor is Asian, female 26 year old, primary pheresis of single normal subject

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS18057

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

1

Sequenced DNA Library

library_name

GSM1024740: UW_DnaseSeq_Th2_Wb33676984Rep1

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

35418720

Reads aligned (%)

96.8

Duplicates removed (%)

8.4

Number of peaks

44165 (qval < 1E-05)

hg19

Number of total reads

35418720

Reads aligned (%)

96.0

Duplicates removed (%)

10.2

Number of peaks

44129 (qval < 1E-05)