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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ama-1
wikigenes
PDBj
CellType: Mixed embryo
ATCC
MeSH
RIKEN BRC
SRX2011723
GSM2267043: KW2309-L4440-1Ama-2-CHIP; Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ama-1
Cell type
Cell type Class
Embryo
Cell type
Mixed embryo
NA
NA
Attributes by original data submitter
Sample
source_name
mixed stage early embryos
range of embryonic cell stages
1cell to 350 cell stage
strain
KW2309
genotype/variation
control
chip antibody
anti-AMA-1 (Novus Biological, Cat# 38520002)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA Pol II-DNA complexes were isolated using AMA-1 antibody from prepared lysates. DNA CHIP-seq library is prepared as described in Bowmen et al (doi:10.1186/1471-2164-14-466)
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
11867230
Reads aligned (%)
98.0
Duplicates removed (%)
20.3
Number of peaks
4423 (qval < 1E-05)
ce10
Number of total reads
11867230
Reads aligned (%)
98.0
Duplicates removed (%)
20.3
Number of peaks
4424 (qval < 1E-05)
Base call quality data from
DBCLS SRA