SRX2007819
GSM2264623: MCF7 Veh input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
chip antibody
none
cell line
MCF7

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, lysed in a buffer containing sarkosyl and sonicated. ThruPLEX-FD Prep kit, Rubicon Genomics

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48861485
Reads aligned (%)
94.2
Duplicates removed (%)
5.6
Number of peaks
1015 (qval < 1E-05)

hg19

Number of total reads
48861485
Reads aligned (%)
93.4
Duplicates removed (%)
6.7
Number of peaks
872 (qval < 1E-05)

Base call quality data from DBCLS SRA