SRX2007817
GSM2264621: MCF7 MLL1 Veh; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KMT2A

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
chip antibody
anti-MLL1 (A300-086A, Bethyl)
cell line
MCF7
treatment
vehicle

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, lysed in a buffer containing sarkosyl and sonicated. ThruPLEX-FD Prep kit, Rubicon Genomics

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
89472480
Reads aligned (%)
93.7
Duplicates removed (%)
29.7
Number of peaks
1745 (qval < 1E-05)

hg19

Number of total reads
89472480
Reads aligned (%)
92.8
Duplicates removed (%)
30.9
Number of peaks
1391 (qval < 1E-05)

Base call quality data from DBCLS SRA