SRX2007816
GSM2264620: MCF7 input E2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
chip antibody
none
cell line
MCF7
treatment
10 nM estradiol (E2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, lysed in a buffer containing sarkosyl and sonicated. ThruPLEX-FD Prep kit, Rubicon Genomics

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17744092
Reads aligned (%)
98.0
Duplicates removed (%)
5.9
Number of peaks
211 (qval < 1E-05)

hg19

Number of total reads
17744092
Reads aligned (%)
97.2
Duplicates removed (%)
6.8
Number of peaks
505 (qval < 1E-05)

Base call quality data from DBCLS SRA