Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
Monocytes
MeSH Description
Large, phagocytic mononuclear leukocytes produced in the vertebrate BONE MARROW and released into the BLOOD; contain a large, oval or somewhat indented nucleus surrounded by voluminous cytoplasm and numerous organelles.

Attributes by original data submitter

Sample

source_name
RPMI 4h H3K9me3
background strain
Adult Human Peripheral Blood
cell type
Monocyte
treatment
Mono_4h_Naive (culture only, collected at 4 hour of exposure)
chip antibody
Rabbit polyclonal anti-H3K9me3 (Diagenode, cat. # pAb-193-050)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
52193332
Reads aligned (%)
96.1
Duplicates removed (%)
14.6
Number of peaks
3574 (qval < 1E-05)

hg19

Number of total reads
52193332
Reads aligned (%)
92.2
Duplicates removed (%)
21.9
Number of peaks
2398 (qval < 1E-05)

Base call quality data from DBCLS SRA